PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Do030148.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Dichantheliinae; Dichanthelium
Family bHLH
Protein Properties Length: 65aa    MW: 7680.3 Da    PI: 11.8838
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Do030148.1genomeDichanView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.72.7e-0517501955
                HHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH 19 afeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                ++ eL++++P     + +K +  ++L+++ eYI+sL+
  Do030148.1 17 RLRELKKIVPVG---TRRKADIDAVLRQTAEYICSLE 50
                688********9...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.55E-61759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.108.2E-51757IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MVSLRRRRPF QLMVLRRLRE LKKIVPVGTR RKADIDAVLR QTAEYICSLE LKVAILRRLS  60
DIYGV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002445578.11e-34hypothetical protein SORBIDRAFT_07g021900
TrEMBLK3YKK36e-37K3YKK3_SETIT; Uncharacterized protein
STRINGSi014772m2e-36(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP568856